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cluster treeview  (corel corporation)

 
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    corel corporation cluster treeview
    Cluster Treeview, supplied by corel corporation, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/cluster treeview/product/corel corporation
    Average 90 stars, based on 1 article reviews
    cluster treeview - by Bioz Stars, 2026-05
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    Image Search Results


    a Generation of BAP1 ‐KO cell lines using the CRISPR/Cas9 system using a single guide RNA sequence against exon 4 of the BAP1 gene locus. b Establishment of BAP1 -KO cell clones using human mesothelial cell lines, MeT‐5A and HOMC-D4. BAP1 protein expression was determined by Western blot analysis using GAPDH as the internal control. c Gene expression analysis represented by heatmap of upregulated (seven genes; fold change, >3) and downregulated (40 genes, fold change, <0.1) genes in BAP1 ‐KO cells (#1 and #2) compared with parental (P) and BAP1 -WT (Ctrl) cells. The heatmap was constructed based on the normalized values of all samples using TreeView (Cluster 3.0) http://jtreeview ( http://jtreeview.sourceforge.net ). The corresponding upregulated or downregulated genes in the heatmap are shown on the right side. d RT-PCR analysis for mRNA expression levels of upregulated or downregulated genes in the MeT-5A and HOMC-D4 cells. Representative agarose gels for the RT-PCR products from the parental cells (P), BAP1 -WT cells (Ctrl), and BAP1 -KO cell lines (#1 and #2) are shown.

    Journal: Cell Death Discovery

    Article Title: CAMK2D: a novel molecular target for BAP1 -deficient malignant mesothelioma

    doi: 10.1038/s41420-023-01552-5

    Figure Lengend Snippet: a Generation of BAP1 ‐KO cell lines using the CRISPR/Cas9 system using a single guide RNA sequence against exon 4 of the BAP1 gene locus. b Establishment of BAP1 -KO cell clones using human mesothelial cell lines, MeT‐5A and HOMC-D4. BAP1 protein expression was determined by Western blot analysis using GAPDH as the internal control. c Gene expression analysis represented by heatmap of upregulated (seven genes; fold change, >3) and downregulated (40 genes, fold change, <0.1) genes in BAP1 ‐KO cells (#1 and #2) compared with parental (P) and BAP1 -WT (Ctrl) cells. The heatmap was constructed based on the normalized values of all samples using TreeView (Cluster 3.0) http://jtreeview ( http://jtreeview.sourceforge.net ). The corresponding upregulated or downregulated genes in the heatmap are shown on the right side. d RT-PCR analysis for mRNA expression levels of upregulated or downregulated genes in the MeT-5A and HOMC-D4 cells. Representative agarose gels for the RT-PCR products from the parental cells (P), BAP1 -WT cells (Ctrl), and BAP1 -KO cell lines (#1 and #2) are shown.

    Article Snippet: The heatmap was constructed based on the normalized values of all samples using TreeView (Cluster 3.0) http://jtreeview ( http://jtreeview.sourceforge.net ).

    Techniques: CRISPR, Sequencing, Clone Assay, Expressing, Western Blot, Control, Gene Expression, Construct, Reverse Transcription Polymerase Chain Reaction

    Gene expression studies investigating the pathogenesis of RA

    Journal: The Pharmacogenomics Journal

    Article Title: Gene expression analysis in RA: towards personalized medicine

    doi: 10.1038/tpj.2013.48

    Figure Lengend Snippet: Gene expression studies investigating the pathogenesis of RA

    Article Snippet: , Whole blood , Discovery set 14 RA, validation set 26 RA , Illumina , SAM, hierarchial clustering (treeview), Ingenuity pathway analysis , Responders vs non-responders , Significant differential expression of IFN-type I response genes (IRGs) at 6 months of RTX treatment. Baseline prediction of non-response to RTX with a 3 and 8 IFN type I response gene signature , Raterman et al. .

    Techniques: Gene Expression, Comparison, Expressing, Software, Clone Assay, Diagnostic Assay, Activity Assay, Biomarker Discovery

    Gene expression signatures as a tool for treatment outcome prediction

    Journal: The Pharmacogenomics Journal

    Article Title: Gene expression analysis in RA: towards personalized medicine

    doi: 10.1038/tpj.2013.48

    Figure Lengend Snippet: Gene expression signatures as a tool for treatment outcome prediction

    Article Snippet: , Whole blood , Discovery set 14 RA, validation set 26 RA , Illumina , SAM, hierarchial clustering (treeview), Ingenuity pathway analysis , Responders vs non-responders , Significant differential expression of IFN-type I response genes (IRGs) at 6 months of RTX treatment. Baseline prediction of non-response to RTX with a 3 and 8 IFN type I response gene signature , Raterman et al. .

    Techniques: Gene Expression, Software, Comparison, Expressing, Microarray, Biomarker Discovery, Activation Assay, Real-time Polymerase Chain Reaction, Quantitative Proteomics